Pseudomonas syringae pv. tomato DC3000, PSPTO_4928

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4928
NCBI Old Locus Tag	PSPTO4928
Name	Synonym: PSPTO4928
Replicon	chromosome
Genomic location	5583101 - 5585416 (- strand)

Cross-References

RefSeq	NP_794661.1
GI	28872042
Entrez	1186611
INSDC	AAO58356.1
NCBI Locus Tag	PSPTO_4928
NCBI Old Locus Tag	PSPTO4928
UniParc	UPI00000094B8
UniProtKB Acc	Q87VK8
UniProtKB ID	Y4928_PSESM
UniRef100	UniRef100_Q87VK8
UniRef50	UniRef50_Q46861
UniRef90	UniRef90_Q87VK8

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	19.47
Kyte-Doolittle Hydrophobicity Value	-0.511
Molecular Weight (kDa)	86.3
Isoelectric Point (pI)	9.15

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 193 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004544 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4928

Human Homologs

References