Pseudomonas syringae pv. tomato DC3000, PSPTO_4945

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4945
NCBI Old Locus Tag	PSPTO4945
Name	Synonym: PSPTO4945
Replicon	chromosome
Genomic location	5605041 - 5606456 (- strand)

Cross-References

RefSeq	NP_794678.1
GI	28872059
Entrez	1186630
INSDC	AAO58373.1
NCBI Locus Tag	PSPTO_4945
NCBI Old Locus Tag	PSPTO4945
UniParc	UPI00000094C9
UniProtKB Acc	Q87VJ1
UniProtKB ID	Q87VJ1_PSESM
UniRef100	UniRef100_Q87VJ1
UniRef50	UniRef50_S3ME23
UniRef90	UniRef90_S3ME23

Product

Feature Type	CDS
Coding Frame	1
Product Name	N-acetylmuramoyl-L-alanine amidase family protein
Synonyms
Evidence for Translation
Charge (pH 7)	9.45
Kyte-Doolittle Hydrophobicity Value	-0.113
Molecular Weight (kDa)	50.1
Isoelectric Point (pI)	10.19

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 475 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004562 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4945 Search term: N-acetylmuramoyl-L-alanine amidase family protein

Human Homologs

References