Pseudomonas syringae pv. tomato DC3000, PSPTO_4983

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4983
NCBI Old Locus Tag	PSPTO4983
Name	Synonym: PSPTO4983
Replicon	chromosome
Genomic location	5655241 - 5656665 (- strand)

Cross-References

RefSeq	NP_794716.1
GI	28872097
Entrez	1186668
INSDC	AAO58411.1
NCBI Locus Tag	PSPTO_4983
NCBI Old Locus Tag	PSPTO4983
UniParc	UPI00000094EE
UniProtKB Acc	Q87VF4
UniProtKB ID	HLDE_PSESM
UniRef100	UniRef100_Q87VF4
UniRef50	UniRef50_Q7AAQ7
UniRef90	UniRef90_Q4KJA9

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipopolysaccharide biosynthesis protein RfaE
Synonyms
Evidence for Translation
Charge (pH 7)	-9.39
Kyte-Doolittle Hydrophobicity Value	0.070
Molecular Weight (kDa)	50.3
Isoelectric Point (pI)	5.47

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 466 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004606 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4983 Search term: lipopolysaccharide biosynthesis protein RfaE

Human Homologs

References