Pseudomonas syringae pv. tomato DC3000, PSPTO_5001 (waaG)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5001
NCBI Old Locus Tag	PSPTO5001
Name	waaG Synonym: PSPTO5001
Replicon	chromosome
Genomic location	5680000 - 5681121 (- strand)

Cross-References

RefSeq	NP_794734.1
GI	28872115
Entrez	1186686
INSDC	AAO58429.1
NCBI Locus Tag	PSPTO_5001
NCBI Old Locus Tag	PSPTO5001
UniParc	UPI00000094FE
UniProtKB Acc	Q87VD8
UniProtKB ID	Q87VD8_PSESM
UniRef100	UniRef100_Q87VD8
UniRef50	UniRef50_G8Q3T6
UniRef90	UniRef90_E2XK99

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipopolysaccharide core biosynthesis protein WaaG
Synonyms
Evidence for Translation
Charge (pH 7)	1.28
Kyte-Doolittle Hydrophobicity Value	-0.168
Molecular Weight (kDa)	42.1
Isoelectric Point (pI)	7.32

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 387 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004617 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5001 Search term: waaG Search term: lipopolysaccharide core biosynthesis protein WaaG

Human Homologs

References