Pseudomonas syringae pv. tomato DC3000, PSPTO_5456

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5456
NCBI Old Locus Tag	PSPTO5456
Name	Synonym: PSPTO5456
Replicon	chromosome
Genomic location	6208627 - 6209556 (+ strand)

Cross-References

RefSeq	NP_795181.1
GI	28872562
Entrez	1187143
INSDC	AAO58876.1
NCBI Locus Tag	PSPTO_5456
NCBI Old Locus Tag	PSPTO5456
UniParc	UPI00000096AD
UniProtKB Acc	Q87U58
UniProtKB ID	Q87U58_PSESM
UniRef100	UniRef100_Q87U58
UniRef50	UniRef50_K0WD05
UniRef90	UniRef90_S3MNB0

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-5.71
Kyte-Doolittle Hydrophobicity Value	-0.001
Molecular Weight (kDa)	35.2
Isoelectric Point (pI)	6.00

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 12 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018984 (110 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5456

Human Homologs

References