Pseudomonas syringae pv. tomato DC3000, PSPTO_5462

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5462
NCBI Old Locus TagPSPTO5462
Name
Synonym: PSPTO5462
Replicon chromosome
Genomic location 6222308 - 6223228 (+ strand)

Cross-References

RefSeq NP_795187.1
GI 28872568
Entrez 1187154
INSDC AAO58882.1
NCBI Locus Tag PSPTO_5462
NCBI Old Locus Tag PSPTO5462
UniParc UPI00000096B3
UniProtKB Acc Q87U52
UniProtKB ID Q87U52_PSESM
UniRef100 UniRef100_Q87U52
UniRef50 UniRef50_Q4KKG5
UniRef90 UniRef90_Q87U52

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 3.59
Kyte-Doolittle Hydrophobicity Value -0.224
Molecular Weight (kDa) 34.4
Isoelectric Point (pI) 8.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 470 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000439 (1015 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5462

Human Homologs

References

No references are associated with this feature.