Pseudomonas syringae pv. tomato DC3000, PSPTO_5472

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5472
NCBI Old Locus Tag	PSPTO5472
Name	Synonym: PSPTO5472
Replicon	chromosome
Genomic location	6233359 - 6233694 (- strand)

Cross-References

RefSeq	NP_795196.1
GI	28872577
Entrez	1187164
INSDC	AAO58891.1
NCBI Locus Tag	PSPTO_5472
NCBI Old Locus Tag	PSPTO5472
UniParc	UPI00000096BC
UniProtKB Acc	Q87U43
UniProtKB ID	Q87U43_PSESM
UniRef100	UniRef100_Q87U43
UniRef50	UniRef50_Q4K3M3
UniRef90	UniRef90_Q4K3M3

Product

Feature Type	CDS
Coding Frame	1
Product Name	HU family DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	12.94
Kyte-Doolittle Hydrophobicity Value	-0.579
Molecular Weight (kDa)	12.0
Isoelectric Point (pI)	11.29

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 550 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004916 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5472 Search term: HU family DNA-binding protein

Human Homologs

References