Pseudomonas syringae pv. tomato DC3000, PSPTO_5479

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5479
NCBI Old Locus Tag	PSPTO5479
Name	Synonym: PSPTO5479
Replicon	chromosome
Genomic location	6239166 - 6240506 (+ strand)

Cross-References

RefSeq	NP_795203.1
GI	28872584
Entrez	1187171
INSDC	AAO58898.1
NCBI Locus Tag	PSPTO_5479
NCBI Old Locus Tag	PSPTO5479
UniParc	UPI00000096C3
UniProtKB Acc	Q87U36
UniProtKB ID	Q87U36_PSESM
UniRef100	UniRef100_A0A038G7G4
UniRef50	UniRef50_Q88C61
UniRef90	UniRef90_Q4ZLB1

Product

Feature Type	CDS
Coding Frame	1
Product Name	transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-10.40
Kyte-Doolittle Hydrophobicity Value	0.142
Molecular Weight (kDa)	50.1
Isoelectric Point (pI)	5.73

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 596 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004927 (533 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5479 Search term: transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000358894 cyclin and CBS domain divalent metal cation transport mediator 2 [Source:HGNC Symbol;Acc:HGNC:103] E-value: 1.1e-10 Percent Identity: 27.3
Ensembl 110, assembly GRCh38.p14	ENSP00000392875 cyclin and CBS domain divalent metal cation transport mediator 2 [Source:HGNC Symbol;Acc:HGNC:103] E-value: 1.1e-10 Percent Identity: 27.3

References