Pseudomonas syringae pv. tomato DC3000, PSPTO_5596

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5596
NCBI Old Locus TagPSPTO5596
Name
Synonym: PSPTO5596
Replicon chromosome
Genomic location 6378249 - 6379016 (- strand)

Cross-References

RefSeq NP_795314.1
GI 28872695
Entrez 1187288
INSDC AAO59009.1
NCBI Locus Tag PSPTO_5596
NCBI Old Locus Tag PSPTO5596
UniParc UPI0000009726
UniProtKB Acc Q87TT7
UniProtKB ID Q87TT7_PSESM
UniRef100 UniRef100_Q87TT7
UniRef50 UniRef50_Q9HT24
UniRef90 UniRef90_Q48BG8

Product

Feature Type CDS
Coding Frame 1
Product Name
DeoR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -3.34
Kyte-Doolittle Hydrophobicity Value -0.120
Molecular Weight (kDa) 28.2
Isoelectric Point (pI) 6.17

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 341 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005081 (530 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5596

Human Homologs

References

No references are associated with this feature.