Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_1462 (srmB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_1462
Name
srmB
Replicon chromosome
Genomic location 1705008 - 1706345 (+ strand)

Cross-References

RefSeq YP_273717.1
GI 71736956
Entrez 3559345
INSDC AAZ36720.1
NCBI Locus Tag PSPPH_1462
UniParc UPI0000575525
UniProtKB Acc Q48LK7
UniProtKB ID Q48LK7_PSE14
UniRef100 UniRef100_F3EKS4
UniRef50 UniRef50_A0A098FQD5
UniRef90 UniRef90_Q886J2

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase SrmB
Synonyms
Evidence for Translation
Charge (pH 7) 20.12
Kyte-Doolittle Hydrophobicity Value -0.274
Molecular Weight (kDa) 48.7
Isoelectric Point (pI) 10.36

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 642 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002174 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_1462
Search term: srmB

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837]
E-value: 2.6e-60
Percent Identity: 37.6

References

No references are associated with this feature.