Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_3099 (cspD)

Gene Feature Overview

Strain	Pseudomonas savastanoi pv. phaseolicola 1448A GCF_000012205.1|latest
Locus Tag	PSPPH_3099
Name	cspD
Replicon	chromosome
Genomic location	3596372 - 3596656 (+ strand)

Cross-References

RefSeq	YP_275269.1
GI	71737155
Entrez	3559553
NCBI Locus Tag	PSPPH_3099

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold shock domain-containing protein CspD
Synonyms
Evidence for Translation
Charge (pH 7)	0.43
Kyte-Doolittle Hydrophobicity Value	-0.367
Molecular Weight (kDa)	10237.7
Isoelectric Point (pI)	7.18

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 498 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPPH_3099 Search term: cspD Search term: cold shock domain-containing protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000489735 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 1.9e-08 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000344401 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 1.9e-08 Percent Identity: 36.8
Ensembl 110, assembly GRCh38.p14	ENSP00000490468 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 1.9e-08 Percent Identity: 36.8

References