Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_3872

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_3872
Name
Replicon chromosome
Genomic location 4425815 - 4426540 (- strand)

Cross-References

RefSeq YP_276010.1
GI 71738134
Entrez 3560568
INSDC AAZ37898.1
NCBI Locus Tag PSPPH_3872
UniParc UPI0000575DAF
UniProtKB Acc Q48F27
UniProtKB ID Q48F27_PSE14
UniRef100 UniRef100_F3EAJ8
UniRef50 UniRef50_Q886S5
UniRef90 UniRef90_Q886S5

Product

Feature Type CDS
Coding Frame 1
Product Name
TetR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 7.37
Kyte-Doolittle Hydrophobicity Value -0.224
Molecular Weight (kDa) 27.3
Isoelectric Point (pI) 9.75

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 63 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001978 (500 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_3872

Human Homologs

References

No references are associated with this feature.