Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4129 (trpS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_4129
Name
trpS
Replicon chromosome
Genomic location 4714721 - 4716070 (- strand)

Cross-References

RefSeq YP_276251.1
GI 71734448
EC Number 6.1.1.2
Entrez 3556756
INSDC AAZ34212.1
NCBI Locus Tag PSPPH_4129
UniParc UPI0000575E8C
UniProtKB Acc Q48ED7
UniProtKB ID Q48ED7_PSE14
UniRef100 UniRef100_Q48ED7
UniRef50 UniRef50_Q9HVX6
UniRef90 UniRef90_Q87WW4

Product

Feature Type CDS
Coding Frame 1
Product Name
tryptophanyl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -8.41
Kyte-Doolittle Hydrophobicity Value -0.257
Molecular Weight (kDa) 49.6
Isoelectric Point (pI) 5.24

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 601 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004028 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_4129
Search term: trpS

Human Homologs

Ensembl 110, assembly GRCh38.p14
tryptophanyl tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:12730]
E-value: 1.3e-35
Percent Identity: 30.5

References

No references are associated with this feature.