Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4151 (rpoN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_4151
Name
rpoN
Replicon chromosome
Genomic location 4735044 - 4736537 (+ strand)

Cross-References

RefSeq YP_276273.1
GI 71736615
EC Number 2.7.7.6
Entrez 3558998
INSDC AAZ36379.1
NCBI Locus Tag PSPPH_4151
UniParc UPI0000575EA0
UniProtKB Acc Q48EB5
UniProtKB ID Q48EB5_PSE14
UniRef100 UniRef100_Q48EB5
UniRef50 UniRef50_P0A171
UniRef90 UniRef90_Q9FDD8

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase factor sigma-54
Synonyms
Evidence for Translation
Charge (pH 7) -29.12
Kyte-Doolittle Hydrophobicity Value -0.543
Molecular Weight (kDa) 56.7
Isoelectric Point (pI) 4.44

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 396 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004051 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_4151
Search term: rpoN

Human Homologs

References

No references are associated with this feature.