Strain |
Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest |
Locus Tag |
PSPPH_4593
|
Name |
rpsJ
|
Replicon | chromosome |
Genomic location | 5227149 - 5227541 (- strand) |
RefSeq | YP_276707.1 |
GI | 71734713 |
Entrez | 3557030 |
INSDC | AAZ34477.1 |
NCBI Locus Tag | PSPPH_4593 |
UniParc | UPI00000084E6 |
UniProtKB Acc | Q48D35 |
UniProtKB ID | RS10_PSE14 |
UniRef100 | UniRef100_Q48D35 |
UniRef50 | UniRef50_Q48D35 |
UniRef90 | UniRef90_Q48D35 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S10
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 6.71 |
Kyte-Doolittle Hydrophobicity Value | -0.270 |
Molecular Weight (kDa) | 14732.0 |
Isoelectric Point (pI) | 10.88 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 98.1 |
6X9Q | RIBOSOME,TRANSCRIPTION/TRANSLATION | 06/03/20 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Escherichia coli; SYNTHETIC CONSTRUCT | 4.8 | ELECTRON MICROSCOPY | 90.3 |
7PJW | RIBOSOME | 08/24/21 | Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi) | Escherichia coli | 4.0 | ELECTRON MICROSCOPY | 90.3 |
4V9C | Ribosome/Antibiotic | 07/25/12 | Allosteric control of the ribosome by small-molecule antibiotics | Escherichia coli; SYNTHETIC CONSTRUCT | 3.3 | X-RAY DIFFRACTION | 90.3 |
7P3K | RIBOSOME | 07/08/21 | Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control) | Escherichia coli (strain K12); Escherichia coli K-12 | 2.9 | ELECTRON MICROSCOPY | 90.3 |
4WOI | RIBOSOME | 10/15/14 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | Escherichia coli; Escherichia coli str. K-12 substr. MDS42; Thermus thermophilus; SYNTHETIC CONSTRUCT | 3 | X-RAY DIFFRACTION | 90.3 |
7OE0 | RIBOSOME | 04/30/21 | E. coli pre-30S delta rbfA ribosomal subunit class F | Escherichia coli BW25113 | 2.69 | ELECTRON MICROSCOPY | 90.3 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 98.1 |
4V55 | RIBOSOME | 06/17/07 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | Escherichia coli; Thermus thermophilus | 4 | X-RAY DIFFRACTION | 90.3 |
4V50 | RIBOSOME | 08/16/06 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | Escherichia coli; SYNTHETIC CONSTRUCT | 3.22 | X-RAY DIFFRACTION | 90.3 |
4V52 | RIBOSOME | 06/15/07 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | Escherichia coli | 3.21 | X-RAY DIFFRACTION | 90.3 |
4V5B | RIBOSOME | 11/22/07 | Structure of PDF binding helix in complex with the ribosome. | ESCHERICHIA COLI; SYNTHETIC CONSTRUCT | 3.74 | X-RAY DIFFRACTION | 90.3 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 98.1 |
4V4Q | RIBOSOME | 08/30/05 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | Escherichia coli | 3.46 | X-RAY DIFFRACTION | 90.3 |
7OE1 | RIBOSOME | 04/30/21 | 30S ribosomal subunit from E. coli | Escherichia coli (strain K12); Escherichia coli str. K-12 substr. MG1655 | 3.05 | ELECTRON MICROSCOPY | 90.3 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 98.1 |
7O19 | TRANSLATION | 03/29/21 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | Escherichia coli K-12; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 90.3 |
6X7K | RIBOSOME,TRANSCRIPTION/TRANSLATION | 05/30/20 | Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site | Escherichia coli; SYNTHETIC CONSTRUCT | 3.1 | ELECTRON MICROSCOPY | 90.3 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
Nitrofurantoin | DB00698 | DrugBank | 5.1.4 | P0A7R5 | 30S ribosomal protein S10 | 90.3 | 103 | 1.6e-45 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 664 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001446 (528 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PSPPH_4593
Search term: rpsJ
Search term: 30S ribosomal protein S10
|