Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4938

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_4938
Name
Replicon chromosome
Genomic location 5612090 - 5612863 (+ strand)

Cross-References

RefSeq YP_277027.1
GI 71735051
Entrez 3557377
INSDC AAZ34815.1
NCBI Locus Tag PSPPH_4938
UniParc UPI000057613F
UniProtKB Acc Q48C66
UniProtKB ID Q48C66_PSE14
UniRef100 UniRef100_Q48C66
UniRef50 UniRef50_D7I6D4
UniRef90 UniRef90_D7I6D4

Product

Feature Type CDS
Coding Frame 1
Product Name
amino acid ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.37
Kyte-Doolittle Hydrophobicity Value -0.179
Molecular Weight (kDa) 28.4
Isoelectric Point (pI) 6.89

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004745 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_4938

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.1e-22
Percent Identity: 31.4
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.1e-22
Percent Identity: 31.4
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.1e-22
Percent Identity: 31.4
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.1e-22
Percent Identity: 31.4

References

No references are associated with this feature.