Pseudomonas sp. UW4, PputUW4_00016 (def1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. UW4
GCF_000316175.1|latest
Locus Tag
PputUW4_00016
Name
def1
Replicon chromosome
Genomic location 17448 - 17954 (- strand)

Cross-References

RefSeq YP_007027030.1
GI 426406931
EC Number 3.5.1.88
Entrez 14053717
INSDC AFY17225.1
NCBI Locus Tag PputUW4_00016
UniParc UPI000171FC23
UniProtKB Acc K9NDF8
UniProtKB ID K9NDF8_9PSED
UniRef100 UniRef100_B1PZ35
UniRef50 UniRef50_Q9I7A8
UniRef90 UniRef90_B1PZ35

Product

Feature Type CDS
Coding Frame 1
Product Name
peptide deformylase
Synonyms
Evidence for Translation
Charge (pH 7) -6.13
Kyte-Doolittle Hydrophobicity Value -0.376
Molecular Weight (kDa) 19.3
Isoelectric Point (pI) 4.95

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 588 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000019 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputUW4_00016
Search term: def1

Human Homologs

References

No references are associated with this feature.