Pseudomonas sp. UW4, PputUW4_01823 (cspD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. UW4
GCF_000316175.1|latest |
| Locus Tag |
PputUW4_01823
|
| Name |
cspD
|
| Replicon | chromosome |
| Genomic location | 2152252 - 2152506 (- strand) |
Cross-References
| RefSeq | YP_007028833.1 |
| GI | 426408734 |
| Entrez | 14051243 |
| NCBI Locus Tag | PputUW4_01823 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
cold-shock protein CspD
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.46 |
| Kyte-Doolittle Hydrophobicity Value | -0.242 |
| Molecular Weight (kDa) | 9026.3 |
| Isoelectric Point (pI) | 8.95 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 500 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002930 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PputUW4_01823
Search term: cspD
Search term: cold-shock protein CspD
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
5.3e-07
Percent Identity:
35.2
|
|
Ensembl
110, assembly
GRCh38.p14
|
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value:
5.3e-07
Percent Identity:
35.2
|
References
No references are associated with this feature.