Pseudomonas sp. UW4, PputUW4_04371 (sodB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. UW4
GCF_000316175.1|latest
Locus Tag
PputUW4_04371
Name
sodB
Replicon chromosome
Genomic location 5019534 - 5020130 (+ strand)

Cross-References

RefSeq YP_007031368.1
GI 426411269
EC Number 1.15.1.1
Entrez 14054942
INSDC AFY21563.1
NCBI Locus Tag PputUW4_04371
UniParc UPI0002705FCB
UniProtKB Acc K9NQW3
UniProtKB ID K9NQW3_9PSED
UniRef100 UniRef100_K9NQW3
UniRef50 UniRef50_P09223
UniRef90 UniRef90_P09223

Product

Feature Type CDS
Coding Frame 1
Product Name
superoxide dismutase
Synonyms
Evidence for Translation
Charge (pH 7) -5.15
Kyte-Doolittle Hydrophobicity Value -0.288
Molecular Weight (kDa) 22.0
Isoelectric Point (pI) 5.81

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3SDP OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) 05/06/91 THE 2.1 ANGSTROMS RESOLUTION STRUCTURE OF IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 91.4
1DT0 OXIDOREDUCTASE 01/10/00 CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 95.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 530 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003959 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputUW4_04371
Search term: sodB

Human Homologs

Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 7.1e-42
Percent Identity: 44.9
Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 7.1e-42
Percent Identity: 44.9

References

No references are associated with this feature.