Pseudomonas protegens Pf-5, PFL_0057

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0057
Name
Replicon chromosome
Genomic location 55021 - 56079 (+ strand)

Cross-References

RefSeq YP_257209.1
GI 70733570
Entrez 3480657
INSDC AAY95475.1
NCBI Locus Tag PFL_0057
UniParc UPI000054CB97
UniProtKB Acc Q4KKM4
UniProtKB ID Q4KKM4_PSEF5
UniRef100 UniRef100_Q4KKM4
UniRef50 UniRef50_Q4KKM4
UniRef90 UniRef90_Q4KKM4

Product

Feature Type CDS
Coding Frame 1
Product Name
radical SAM protein
Synonyms
Evidence for Translation
Charge (pH 7) 7.47
Kyte-Doolittle Hydrophobicity Value -0.286
Molecular Weight (kDa) 39.3
Isoelectric Point (pI) 8.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 299 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000068 (517 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0057

Human Homologs

References

No references are associated with this feature.