Pseudomonas protegens Pf-5, PFL_0108

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0108
Name
Replicon chromosome
Genomic location 111417 - 111737 (- strand)

Cross-References

RefSeq YP_257260.1
GI 70733620
Entrez 3480707
INSDC AAY95525.1
NCBI Locus Tag PFL_0108
UniParc UPI000054CBCA
UniProtKB Acc Q4KKH3
UniProtKB ID Q4KKH3_PSEF5
UniRef100 UniRef100_Q4KKH3
UniRef50 UniRef50_A0A031J3X6
UniRef90 UniRef90_Q4KKH3

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -3.53
Kyte-Doolittle Hydrophobicity Value 0.208
Molecular Weight (kDa) 11.1
Isoelectric Point (pI) 4.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 6 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005006 (1062 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0108

Human Homologs

References

No references are associated with this feature.