Pseudomonas protegens Pf-5, PFL_0131 (lapD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0131
Name	lapD
Replicon	chromosome
Genomic location	137776 - 139722 (+ strand)

Cross-References

RefSeq	YP_257278.1
GI	70733638
Entrez	3480725
INSDC	AAY95543.1
NCBI Locus Tag	PFL_0131
UniParc	UPI000054CBDC
UniProtKB Acc	Q4KKF5
UniProtKB ID	Q4KKF5_PSEF5
UniRef100	UniRef100_Q4KKF5
UniRef50	UniRef50_A0A085G4C7
UniRef90	UniRef90_Q4KKF5

Product

Feature Type	CDS
Coding Frame	1
Product Name	cyclic dimeric GMP binding protein LapD
Synonyms
Evidence for Translation
Charge (pH 7)	-11.03
Kyte-Doolittle Hydrophobicity Value	-0.032
Molecular Weight (kDa)	71.8
Isoelectric Point (pI)	5.85

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
3PFM	SIGNALING PROTEIN	10/28/10	Crystal structure of a EAL domain of GGDEF domain protein from Pseudomonas fluorescens Pf	Pseudomonas fluorescens	2.908	X-RAY DIFFRACTION	100.0

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 418 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001350 (454 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0131 Search term: lapD Search term: cyclic dimeric GMP binding protein LapD

Human Homologs

References