Pseudomonas protegens Pf-5, PFL_0185 (gabD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0185
Name
gabD
Replicon chromosome
Genomic location 219230 - 220672 (+ strand)

Cross-References

RefSeq YP_257331.1
GI 70733691
EC Number 1.2.1.16
Entrez 3480778
INSDC AAY95596.1
NCBI Locus Tag PFL_0185
UniParc UPI000054CC10
UniProtKB Acc Q4KKA2
UniProtKB ID Q4KKA2_PSEF5
UniRef100 UniRef100_Q4KKA2
UniRef50 UniRef50_Q59T88
UniRef90 UniRef90_Q4KKA2

Product

Feature Type CDS
Coding Frame 1
Product Name
succinate-semialdehyde dehydrogenase I
Synonyms
Evidence for Translation
Charge (pH 7) -3.41
Kyte-Doolittle Hydrophobicity Value -0.040
Molecular Weight (kDa) 51.6
Isoelectric Point (pI) 5.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 605 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000262 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0185
Search term: gabD

Human Homologs

Ensembl 110, assembly GRCh38.p14
aldehyde dehydrogenase 5 family member A1 [Source:HGNC Symbol;Acc:HGNC:408]
E-value: 7.4e-154
Percent Identity: 56.0

References

No references are associated with this feature.