Pseudomonas protegens Pf-5, PFL_0238

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0238
Name
Replicon	chromosome
Genomic location	274718 - 277804 (+ strand)

Cross-References

RefSeq	YP_257384.1
GI	70733744
Entrez	3480831
INSDC	AAY95649.1
NCBI Locus Tag	PFL_0238
UniParc	UPI000054CC45
UniProtKB Acc	Q4KK49
UniProtKB ID	Q4KK49_PSEF5
UniRef100	UniRef100_Q4KK49
UniRef50	UniRef50_F6A9K9
UniRef90	UniRef90_G8PZE0

Product

Feature Type	CDS
Coding Frame	1
Product Name	RND hydrophobe/amphiphile efflux-1 (HAE1) family transporter permease
Synonyms
Evidence for Translation
Charge (pH 7)	-9.88
Kyte-Doolittle Hydrophobicity Value	0.132
Molecular Weight (kDa)	113581.4
Isoelectric Point (pI)	5.75

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 487 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000156 (999 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0238 Search term: RND hydrophobe/amphiphile efflux-1 (HAE1) family transporter permease

Human Homologs

References