Pseudomonas protegens Pf-5, PFL_0303 (rfbC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0303
Name
rfbC
Replicon chromosome
Genomic location 351686 - 352231 (- strand)

Cross-References

RefSeq YP_257449.1
GI 70733809
EC Number 5.1.3.13
Entrez 3480896
INSDC AAY95714.1
NCBI Locus Tag PFL_0303
UniParc UPI000054CC86
UniProtKB Acc Q4KJY4
UniProtKB ID Q4KJY4_PSEF5
UniRef100 UniRef100_Q4KJY4
UniRef50 UniRef50_P37780
UniRef90 UniRef90_Q4KJY4

Product

Feature Type CDS
Coding Frame 1
Product Name
dTDP-4-dehydrorhamnose 3,5-epimerase
Synonyms
Evidence for Translation
Charge (pH 7) -6.83
Kyte-Doolittle Hydrophobicity Value -0.281
Molecular Weight (kDa) 20514.9
Isoelectric Point (pI) 4.85

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 474 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004755 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0303
Search term: rfbC

Human Homologs

References

No references are associated with this feature.