Pseudomonas protegens Pf-5, PFL_0343

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0343
Name
Replicon	chromosome
Genomic location	396109 - 396882 (- strand)

Cross-References

RefSeq	YP_257488.1
GI	70733848
Entrez	3480935
INSDC	AAY95753.1
NCBI Locus Tag	PFL_0343
UniParc	UPI000054CCAD
UniProtKB Acc	Q4KJU5
UniProtKB ID	Q4KJU5_PSEF5
UniRef100	UniRef100_Q4KJU5
UniRef50	UniRef50_P39456
UniRef90	UniRef90_W6VQ29

Product

Feature Type	CDS
Coding Frame	1
Product Name	amino acid ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.39
Kyte-Doolittle Hydrophobicity Value	-0.148
Molecular Weight (kDa)	28.2
Isoelectric Point (pI)	7.15

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004745 (526 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0343 Search term: amino acid ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000392983 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 1.2e-22 Percent Identity: 32.2
Ensembl 110, assembly GRCh38.p14	ENSP00000265723 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 1.2e-22 Percent Identity: 32.2
Ensembl 110, assembly GRCh38.p14	ENSP00000496956 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 1.2e-22 Percent Identity: 32.2
Ensembl 110, assembly GRCh38.p14	ENSP00000352135 ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45] E-value: 1.2e-22 Percent Identity: 32.2

References