Pseudomonas protegens Pf-5, PFL_0512 (rfaC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0512
Name
rfaC
Replicon chromosome
Genomic location 598286 - 599347 (+ strand)

Cross-References

RefSeq YP_257656.1
GI 70734016
EC Number 2.4.-.-
Entrez 3481103
INSDC AAY95921.1
NCBI Locus Tag PFL_0512
UniParc UPI000054CD55
UniProtKB Acc Q4KJC7
UniProtKB ID Q4KJC7_PSEF5
UniRef100 UniRef100_Q4KJC7
UniRef50 UniRef50_P24173
UniRef90 UniRef90_Q4KJC7

Product

Feature Type CDS
Coding Frame 1
Product Name
lipopolysaccharide heptosyltransferase I
Synonyms
Evidence for Translation
Charge (pH 7) 19.53
Kyte-Doolittle Hydrophobicity Value -0.150
Molecular Weight (kDa) 39.4
Isoelectric Point (pI) 10.39

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 263 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004618 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0512
Search term: rfaC

Human Homologs

References

No references are associated with this feature.