Pseudomonas protegens Pf-5, PFL_0527 (msbA)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0527
Name	msbA
Replicon	chromosome
Genomic location	615302 - 617107 (+ strand)

Cross-References

RefSeq	YP_257671.1
GI	70734031
Entrez	3481118
INSDC	AAY95936.1
NCBI Locus Tag	PFL_0527
UniParc	UPI000054CD64
UniProtKB Acc	Q4KJB2
UniProtKB ID	MSBA_PSEF5
UniRef100	UniRef100_Q4KJB2
UniRef50	UniRef50_Q9HUG8
UniRef90	UniRef90_Q4KJB2

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipid A export permease/ATP-binding protein MsbA
Synonyms
Evidence for Translation
Charge (pH 7)	5.14
Kyte-Doolittle Hydrophobicity Value	0.167
Molecular Weight (kDa)	66.2
Isoelectric Point (pI)	8.86

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004607 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0527 Search term: msbA Search term: lipid A export permease/ATP-binding protein MsbA

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000440288 ATP binding cassette subfamily B member 9 [Source:HGNC Symbol;Acc:HGNC:50] E-value: 3.6e-81 Percent Identity: 34.3
Ensembl 110, assembly GRCh38.p14	ENSP00000376234 ATP binding cassette subfamily B member 9 [Source:HGNC Symbol;Acc:HGNC:50] E-value: 3.6e-81 Percent Identity: 34.3
Ensembl 110, assembly GRCh38.p14	ENSP00000280560 ATP binding cassette subfamily B member 9 [Source:HGNC Symbol;Acc:HGNC:50] E-value: 3.6e-81 Percent Identity: 34.3

References