Pseudomonas protegens Pf-5, PFL_0718

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0718
Name
Replicon chromosome
Genomic location 832250 - 833626 (+ strand)

Cross-References

RefSeq YP_257860.1
GI 70734220
Entrez 3481307
INSDC AAY96125.1
NCBI Locus Tag PFL_0718
UniParc UPI000054CE20
UniProtKB Acc Q4KIS3
UniProtKB ID Q4KIS3_PSEF5
UniRef100 UniRef100_Q4KIS3
UniRef50 UniRef50_A1WJL6
UniRef90 UniRef90_Q3KIJ2

Product

Feature Type CDS
Coding Frame 1
Product Name
aromatic acid:H+ symporter (AAHS) family MFS transporter
Synonyms
Evidence for Translation
Charge (pH 7) 3.83
Kyte-Doolittle Hydrophobicity Value 0.677
Molecular Weight (kDa) 49921.3
Isoelectric Point (pI) 8.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 531 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001513 (768 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0718

Human Homologs

Ensembl 110, assembly GRCh38.p14
synaptic vesicle glycoprotein 2B [Source:HGNC Symbol;Acc:HGNC:16874]
E-value: 8.7e-27
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
synaptic vesicle glycoprotein 2B [Source:HGNC Symbol;Acc:HGNC:16874]
E-value: 8.7e-27
Percent Identity: 27.0
Ensembl 110, assembly GRCh38.p14
synaptic vesicle glycoprotein 2B [Source:HGNC Symbol;Acc:HGNC:16874]
E-value: 8.7e-27
Percent Identity: 27.0

References

No references are associated with this feature.