Pseudomonas protegens Pf-5, PFL_0867 (speC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0867
Name
speC
Replicon chromosome
Genomic location 1006098 - 1007261 (- strand)

Cross-References

RefSeq YP_257999.1
GI 70734359
EC Number 4.1.1.17
Entrez 3481447
INSDC AAY96264.1
NCBI Locus Tag PFL_0867
UniParc UPI000054CEAB
UniProtKB Acc Q4KID4
UniProtKB ID Q4KID4_PSEF5
UniRef100 UniRef100_Q4KID4
UniRef50 UniRef50_Q4KID4
UniRef90 UniRef90_Q4KID4

Product

Feature Type CDS
Coding Frame 1
Product Name
ornithine decarboxylase
Synonyms
Evidence for Translation
Charge (pH 7) -12.57
Kyte-Doolittle Hydrophobicity Value -0.108
Molecular Weight (kDa) 43427.1
Isoelectric Point (pI) 4.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 578 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004100 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0867
Search term: speC

Human Homologs

References

No references are associated with this feature.