Pseudomonas protegens Pf-5, PFL_0877 (dppB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0877
Name
dppB
Replicon chromosome
Genomic location 1016888 - 1017898 (- strand)

Cross-References

RefSeq YP_258009.2
GI 346642736
Entrez 3476802
INSDC AAY90165.2
NCBI Locus Tag PFL_0877
UniParc UPI000219FEF7
UniProtKB Acc Q4KIC4
UniProtKB ID Q4KIC4_PSEF5
UniRef100 UniRef100_Q4KIC4
UniRef50 UniRef50_P0AEG0
UniRef90 UniRef90_G8Q990

Product

Feature Type CDS
Coding Frame 1
Product Name
dipeptide ABC transporter permease DppB
Synonyms
Evidence for Translation
Charge (pH 7) 3.41
Kyte-Doolittle Hydrophobicity Value 0.671
Molecular Weight (kDa) 37.0
Isoelectric Point (pI) 8.92

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 582 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004090 (513 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0877
Search term: dppB

Human Homologs

References

No references are associated with this feature.