Pseudomonas protegens Pf-5, PFL_0963

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0963
Name
Replicon chromosome
Genomic location 1101522 - 1103312 (+ strand)

Cross-References

RefSeq YP_258094.1
GI 70728345
Entrez 3476737
INSDC AAY90250.1
NCBI Locus Tag PFL_0963
UniParc UPI000054CF09
UniProtKB Acc Q4KI39
UniProtKB ID Q4KI39_PSEF5
UniRef100 UniRef100_Q4KI39
UniRef50 UniRef50_Q4KI39
UniRef90 UniRef90_Q4KI39

Product

Feature Type CDS
Coding Frame 1
Product Name
lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7) -8.67
Kyte-Doolittle Hydrophobicity Value -0.186
Molecular Weight (kDa) 64085.0
Isoelectric Point (pI) 5.10

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 44 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG019819 (41 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0963
Search term: lipoprotein

Human Homologs

References

No references are associated with this feature.