Pseudomonas protegens Pf-5, PFL_1002

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1002
Name
Replicon chromosome
Genomic location 1147205 - 1148173 (- strand)

Cross-References

RefSeq YP_258133.1
GI 70728384
Entrez 3475394
INSDC AAY90289.1
NCBI Locus Tag PFL_1002
UniParc UPI000054CF30
UniProtKB Acc Q4KI00
UniProtKB ID Q4KI00_PSEF5
UniRef100 UniRef100_Q4KI00
UniRef50 UniRef50_Q4KI00
UniRef90 UniRef90_Q4KI00

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -0.47
Kyte-Doolittle Hydrophobicity Value -0.032
Molecular Weight (kDa) 35.3
Isoelectric Point (pI) 6.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 470 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000157 (872 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1002

Human Homologs

References

No references are associated with this feature.