Pseudomonas protegens Pf-5, PFL_1028

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1028
Name
Replicon chromosome
Genomic location 1179770 - 1182832 (- strand)

Cross-References

RefSeq YP_258159.1
GI 70728410
Entrez 3477517
INSDC AAY90315.1
NCBI Locus Tag PFL_1028
UniParc UPI000054CF4A
UniProtKB Acc Q4KHX4
UniProtKB ID Q4KHX4_PSEF5
UniRef100 UniRef100_Q4KHX4
UniRef50 UniRef50_W0YY82
UniRef90 UniRef90_Q4KHX4

Product

Feature Type CDS
Coding Frame 1
Product Name
RND transporter, HAE1 family
Synonyms
Evidence for Translation
Charge (pH 7) -4.24
Kyte-Doolittle Hydrophobicity Value 0.398
Molecular Weight (kDa) 110.2
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 487 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001500 (799 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1028

Human Homologs

References

No references are associated with this feature.