Pseudomonas protegens Pf-5, PFL_1061 (hupN)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_1061
Name	hupN
Replicon	chromosome
Genomic location	1210395 - 1210676 (+ strand)

Cross-References

RefSeq	YP_258192.1
GI	70728443
Entrez	3477472
INSDC	AAY90348.1
NCBI Locus Tag	PFL_1061
UniParc	UPI000054CF6B
UniProtKB Acc	Q4KHU1
UniProtKB ID	Q4KHU1_PSEF5
UniRef100	UniRef100_Q4KHU1
UniRef50	UniRef50_Q4KHU1
UniRef90	UniRef90_Q4KHU1

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA-binding protein HU, nu subunit
Synonyms
Evidence for Translation
Charge (pH 7)	1.99
Kyte-Doolittle Hydrophobicity Value	-0.042
Molecular Weight (kDa)	9.7
Isoelectric Point (pI)	9.91

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 502 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001736 (503 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_1061 Search term: hupN Search term: DNA-binding protein HU, nu subunit

Human Homologs

References