Pseudomonas protegens Pf-5, PFL_1095 (rimM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1095
Name
rimM
Replicon chromosome
Genomic location 1250073 - 1250609 (+ strand)

Cross-References

RefSeq YP_258226.1
GI 70728477
Entrez 3477467
INSDC AAY90382.1
NCBI Locus Tag PFL_1095
UniParc UPI000054CF8D
UniProtKB Acc Q4KHQ7
UniProtKB ID RIMM_PSEF5
UniRef100 UniRef100_Q4KHQ7
UniRef50 UniRef50_Q4KHQ7
UniRef90 UniRef90_Q4KHQ7

Product

Feature Type CDS
Coding Frame 1
Product Name
16S rRNA-processing protein RimM
Synonyms
Evidence for Translation
Charge (pH 7) -7.61
Kyte-Doolittle Hydrophobicity Value -0.140
Molecular Weight (kDa) 19.8
Isoelectric Point (pI) 4.59

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 453 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001938 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1095
Search term: rimM

Human Homologs

References

No references are associated with this feature.