Pseudomonas protegens Pf-5, PFL_1139

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1139
Name
Replicon chromosome
Genomic location 1307025 - 1307741 (+ strand)

Cross-References

RefSeq YP_258270.1
GI 70728521
Entrez 3476810
INSDC AAY90426.1
NCBI Locus Tag PFL_1139
UniParc UPI000054CFB9
UniProtKB Acc Q4KHL3
UniProtKB ID Q4KHL3_PSEF5
UniRef100 UniRef100_Q4KHL3
UniRef50 UniRef50_Q886S5
UniRef90 UniRef90_Q4KHL3

Product

Feature Type CDS
Coding Frame 1
Product Name
TetR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.17
Kyte-Doolittle Hydrophobicity Value -0.214
Molecular Weight (kDa) 26.5
Isoelectric Point (pI) 7.71

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 72 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001978 (500 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1139

Human Homologs

References

No references are associated with this feature.