Pseudomonas protegens Pf-5, PFL_1165 (dapE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1165
Name
dapE
Replicon chromosome
Genomic location 1332622 - 1333773 (- strand)

Cross-References

RefSeq YP_258296.1
GI 70728547
EC Number 3.5.1.18
Entrez 3478982
INSDC AAY90452.1
NCBI Locus Tag PFL_1165
UniParc UPI000054CFD3
UniProtKB Acc Q4KHI7
UniProtKB ID DAPE_PSEF5
UniRef100 UniRef100_Q4KHI7
UniRef50 UniRef50_Q9KQ52
UniRef90 UniRef90_Q886Q4

Product

Feature Type CDS
Coding Frame 1
Product Name
succinyl-diaminopimelate desuccinylase
Synonyms
Evidence for Translation
Charge (pH 7) -12.53
Kyte-Doolittle Hydrophobicity Value -0.049
Molecular Weight (kDa) 41062.2
Isoelectric Point (pI) 5.35

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 489 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001121 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1165
Search term: dapE

Human Homologs

References

No references are associated with this feature.