Pseudomonas protegens Pf-5, PFL_1242

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1242
Name
Replicon chromosome
Genomic location 1412664 - 1413359 (- strand)

Cross-References

RefSeq YP_258373.1
GI 70728624
Entrez 3477419
INSDC AAY90529.1
NCBI Locus Tag PFL_1242
UniParc UPI000054D020
UniProtKB Acc Q4KHB0
UniProtKB ID Q4KHB0_PSEF5
UniRef100 UniRef100_Q4KHB0
UniRef50 UniRef50_Q9RPT0
UniRef90 UniRef90_A0A0B7D5Q6

Product

Feature Type CDS
Coding Frame 1
Product Name
YaeB/AF_0241 family methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -2.86
Kyte-Doolittle Hydrophobicity Value -0.147
Molecular Weight (kDa) 25.8
Isoelectric Point (pI) 6.02

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 244 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002240 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1242

Human Homologs

Ensembl 110, assembly GRCh38.p14
tRNA methyltransferase O [Source:HGNC Symbol;Acc:HGNC:30967]
E-value: 5.5e-30
Percent Identity: 46.3

References

No references are associated with this feature.