Pseudomonas protegens Pf-5, PFL_1573

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1573
Name
Replicon chromosome
Genomic location 1770471 - 1771850 (- strand)

Cross-References

RefSeq YP_258699.1
GI 70728965
Entrez 3476481
INSDC AAY90870.1
NCBI Locus Tag PFL_1573
UniParc UPI000054D163
UniProtKB Acc Q4KGD4
UniProtKB ID Q4KGD4_PSEF5
UniRef100 UniRef100_Q4KGD4
UniRef50 UniRef50_A0A0A1PGR3
UniRef90 UniRef90_Q4KGD4

Product

Feature Type CDS
Coding Frame 1
Product Name
SSS family transporter
Synonyms
Evidence for Translation
Charge (pH 7) 10.57
Kyte-Doolittle Hydrophobicity Value 0.999
Molecular Weight (kDa) 48566.6
Isoelectric Point (pI) 9.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 461 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000284 (771 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1573

Human Homologs

Ensembl 110, assembly GRCh38.p14
solute carrier family 5 member 3 [Source:HGNC Symbol;Acc:HGNC:11038]
E-value: 2.4e-08
Percent Identity: 22.4

References

No references are associated with this feature.