Pseudomonas protegens Pf-5, PFL_1954 (mfd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1954
Name
mfd
Replicon chromosome
Genomic location 2182453 - 2185902 (- strand)

Cross-References

RefSeq YP_259073.1
GI 70729336
EC Number 3.6.1.-
Entrez 3478074
INSDC AAY91241.1
NCBI Locus Tag PFL_1954
UniParc UPI000054D2D6
UniProtKB Acc Q4KFB0
UniProtKB ID Q4KFB0_PSEF5
UniRef100 UniRef100_Q4KFB0
UniRef50 UniRef50_Q4KFB0
UniRef90 UniRef90_Q4KFB0

Product

Feature Type CDS
Coding Frame 1
Product Name
transcription-repair coupling factor
Synonyms
Evidence for Translation
Charge (pH 7) -18.72
Kyte-Doolittle Hydrophobicity Value -0.211
Molecular Weight (kDa) 128644.1
Isoelectric Point (pI) 5.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 629 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002580 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1954
Search term: mfd

Human Homologs

References

No references are associated with this feature.