Pseudomonas protegens Pf-5, PFL_1962 (lolD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_1962
Name	lolD
Replicon	chromosome
Genomic location	2194774 - 2195472 (+ strand)

Cross-References

RefSeq	YP_259081.1
GI	70729344
Entrez	3478082
INSDC	AAY91249.1
NCBI Locus Tag	PFL_1962
UniParc	UPI0000ED9215
UniProtKB Acc	Q4KFA2
UniProtKB ID	LOLD_PSEF5
UniRef100	UniRef100_Q4KFA2
UniRef50	UniRef50_Q4KFA2
UniRef90	UniRef90_Q4KFA2

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein-releasing system, ATP-binding protein LolD
Synonyms
Evidence for Translation
Charge (pH 7)	-0.90
Kyte-Doolittle Hydrophobicity Value	-0.062
Molecular Weight (kDa)	25147.8
Isoelectric Point (pI)	6.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002595 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_1962 Search term: lolD Search term: lipoprotein-releasing system, ATP-binding protein LolD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000343849 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000436586 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000513712 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000253577 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000405356 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000413080 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000479985 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000402316 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000372722 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000499543 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000496526 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000362492 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 5.8e-19 Percent Identity: 32.6
Ensembl 110, assembly GRCh38.p14	ENSP00000401149 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000415660 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000346206 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7
Ensembl 110, assembly GRCh38.p14	ENSP00000412933 transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43] E-value: 5.8e-19 Percent Identity: 29.7

References