Pseudomonas protegens Pf-5, PFL_2106 (rbsD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2106
Name
rbsD
Replicon chromosome
Genomic location 2326983 - 2327387 (+ strand)

Cross-References

RefSeq YP_259214.1
GI 70729476
EC Number 5.4.99.-
Entrez 3478918
INSDC AAY91381.1
NCBI Locus Tag PFL_2106
UniParc UPI000054D362
UniProtKB Acc Q4KEW9
UniProtKB ID RBSD_PSEF5
UniRef100 UniRef100_Q4KEW9
UniRef50 UniRef50_Q5E4V7
UniRef90 UniRef90_Q4KEW9

Product

Feature Type CDS
Coding Frame 1
Product Name
D-ribose pyranase
Synonyms
Evidence for Translation
Charge (pH 7) -2.11
Kyte-Doolittle Hydrophobicity Value 0.339
Molecular Weight (kDa) 14398.8
Isoelectric Point (pI) 6.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 123 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015716 (186 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2106
Search term: rbsD
Search term: D-ribose pyranase

Human Homologs

References

No references are associated with this feature.