Pseudomonas protegens Pf-5, PFL_2112 (infC)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_2112
Name	infC
Replicon	chromosome
Genomic location	2332848 - 2333381 (+ strand)

Cross-References

RefSeq	YP_259220.2
GI	346642875
Entrez	3478924
INSDC	AAY91387.2
NCBI Locus Tag	PFL_2112
UniParc	UPI000012D343
UniProtKB Acc	Q4KEW3
UniProtKB ID	IF3_PSEF5
UniRef100	UniRef100_Q4KEW3
UniRef50	UniRef50_Q4KEW3
UniRef90	UniRef90_Q4KEW3

Product

Feature Type	CDS
Coding Frame	1
Product Name	translation initiation factor IF-3
Synonyms
Evidence for Translation
Charge (pH 7)	7.45
Kyte-Doolittle Hydrophobicity Value	-0.596
Molecular Weight (kDa)	20.1
Isoelectric Point (pI)	10.12

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6VRJ	TRANSLATION	02/07/20	Solution structure of Pseudomonas aeruginosa IF3 C-terminal domain	Pseudomonas aeruginosa	NOT	SOLUTION NMR	92.7

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 582 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002828 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_2112 Search term: infC Search term: translation initiation factor IF-3

Human Homologs

References