Pseudomonas protegens Pf-5, PFL_2546

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2546
Name
Replicon chromosome
Genomic location 2816316 - 2817590 (- strand)

Cross-References

RefSeq YP_259653.1
GI 70729914
Entrez 3478243
INSDC AAY91819.1
NCBI Locus Tag PFL_2546
UniParc UPI000054D513
UniProtKB Acc Q4KDN0
UniProtKB ID Q4KDN0_PSEF5
UniRef100 UniRef100_Q4KDN0
UniRef50 UniRef50_G8QBC2
UniRef90 UniRef90_G8QBC2

Product

Feature Type CDS
Coding Frame 1
Product Name
dihydropyrimidine dehydrogenase subunit B
Synonyms
Evidence for Translation
Charge (pH 7) -11.10
Kyte-Doolittle Hydrophobicity Value -0.031
Molecular Weight (kDa) 46134.4
Isoelectric Point (pI) 5.13

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 388 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000430 (922 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2546

Human Homologs

Ensembl 110, assembly GRCh38.p14
dihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]
E-value: 1.3e-61
Percent Identity: 31.9

References

No references are associated with this feature.