Pseudomonas protegens Pf-5, PFL_3222

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3222
Name
Replicon chromosome
Genomic location 3715542 - 3716924 (+ strand)

Cross-References

RefSeq YP_260327.1
GI 70730586
Entrez 3477842
INSDC AAY92491.1
NCBI Locus Tag PFL_3222
UniParc UPI000054D79C
UniProtKB Acc Q4KBQ6
UniProtKB ID Q4KBQ6_PSEF5
UniRef100 UniRef100_Q4KBQ6
UniRef50 UniRef50_Q4KBQ6
UniRef90 UniRef90_Q4KBQ6

Product

Feature Type CDS
Coding Frame 1
Product Name
aminotransferase
Synonyms
Evidence for Translation
Charge (pH 7) -5.75
Kyte-Doolittle Hydrophobicity Value -0.073
Molecular Weight (kDa) 50612.4
Isoelectric Point (pI) 6.60

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 630 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001602 (650 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3222
Search term: aminotransferase

Human Homologs

References

No references are associated with this feature.