Pseudomonas protegens Pf-5, PFL_3308

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_3308
Name
Replicon	chromosome
Genomic location	3817924 - 3818892 (- strand)

Cross-References

RefSeq	YP_260413.1
GI	70730672
Entrez	3476318
INSDC	AAY92577.1
NCBI Locus Tag	PFL_3308
UniParc	UPI000054D7F2
UniProtKB Acc	Q4KBH0
UniProtKB ID	Q4KBH0_PSEF5
UniRef100	UniRef100_Q4KBH0
UniRef50	UniRef50_A0A0B7D8K4
UniRef90	UniRef90_Q4KBH0

Product

Feature Type	CDS
Coding Frame	1
Product Name	GAF domain/diguanylate cyclase domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-8.45
Kyte-Doolittle Hydrophobicity Value	-0.210
Molecular Weight (kDa)	36.0
Isoelectric Point (pI)	5.16

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005129 (359 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_3308 Search term: GAF domain/diguanylate cyclase domain-containing protein

Human Homologs

References