Pseudomonas protegens Pf-5, PFL_3526

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3526
Name
Replicon chromosome
Genomic location 4065034 - 4065444 (- strand)

Cross-References

RefSeq YP_260629.1
GI 70730888
Entrez 3475345
INSDC AAY92793.1
NCBI Locus Tag PFL_3526
UniParc UPI000054D8CA
UniProtKB Acc Q4KAV4
UniProtKB ID Q4KAV4_PSEF5
UniRef100 UniRef100_Q4KAV4
UniRef50 UniRef50_Q4KAV4
UniRef90 UniRef90_Q4KAV4

Product

Feature Type CDS
Coding Frame 1
Product Name
endoribonuclease L-PSP
Synonyms
Evidence for Translation
Charge (pH 7) -1.56
Kyte-Doolittle Hydrophobicity Value -0.321
Molecular Weight (kDa) 15.2
Isoelectric Point (pI) 5.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 431 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001525 (1734 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3526

Human Homologs

References

No references are associated with this feature.