Pseudomonas protegens Pf-5, PFL_3804

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3804
Name
Replicon chromosome
Genomic location 4403387 - 4404271 (- strand)

Cross-References

RefSeq YP_260904.1
GI 70731163
Entrez 3476901
INSDC AAY93068.1
NCBI Locus Tag PFL_3804
UniParc UPI000054D9DB
UniProtKB Acc Q4KA29
UniProtKB ID Q4KA29_PSEF5
UniRef100 UniRef100_Q4KA29
UniRef50 UniRef50_Q4KA29
UniRef90 UniRef90_Q4KA29

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 0.88
Kyte-Doolittle Hydrophobicity Value -0.088
Molecular Weight (kDa) 32236.6
Isoelectric Point (pI) 7.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 508 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001101 (1135 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3804

Human Homologs

References

No references are associated with this feature.