Pseudomonas protegens Pf-5, PFL_3887 (cspD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_3887
Name	cspD
Replicon	chromosome
Genomic location	4485991 - 4486248 (+ strand)

Cross-References

RefSeq	YP_260987.1
GI	70731246
Entrez	3478271
INSDC	AAY93151.1
NCBI Locus Tag	PFL_3887
UniParc	UPI000054DA2D
UniProtKB Acc	Q4K9U6
UniProtKB ID	Q4K9U6_PSEF5
UniRef100	UniRef100_Q4K9U6
UniRef50	UniRef50_P0A970
UniRef90	UniRef90_Q4K9U6

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold shock domain-containing protein CspD
Synonyms
Evidence for Translation
Charge (pH 7)	-0.54
Kyte-Doolittle Hydrophobicity Value	-0.182
Molecular Weight (kDa)	9.1
Isoelectric Point (pI)	6.52

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 498 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_3887 Search term: cspD Search term: cold shock domain-containing protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000254231 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 3.2e-07 Percent Identity: 31.8
Ensembl 110, assembly GRCh38.p14	ENSP00000363314 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 3.2e-07 Percent Identity: 31.8

References